The pairwise homoplasy index
WebbPage topic: "Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa - Oxford Academic". Created by: Leroy Patterson. Language: english. WebbGlobal genome pairwise sequence alignments were prepared with mVista LAGAN [45] and multi-reticulate analyses performed using SplitsTree4 [46] with an uncorrected P characters transformation model, excluding all gap sites. The multi-reticulate networks indicate recombination events. A recombination pairwise homoplasy index ...
The pairwise homoplasy index
Did you know?
Webb15 sep. 2024 · A more extreme problem of interpretation of pairwise homoplasies arises in some methods for analyzing electrophoretic data. Suppose that each of three terminal taxa A, B, and C is fixed for a different allele at some locus, and that these taxa are related through an unresolved tree with common ancestor X. Webb30 juli 2024 · SUPPLEMENTARY INFORMATION Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen Oscar A. MacLean 1,#, Spyros Lytras, Steven Weaver2, Joshua B. Singer1, Maciej F. Boni3, Philippe Lemey4, Sergei L. Kosakovsky Pond2,*, David L. Robertson1,* 1MRC-University of Glasgow Centre …
WebbPathogenicity tests and the pairwise homoplasy index test suggest that C. jiangxiense and C. kahawae subsp. kahawae are two independent species. This study represents the first report of C. alienum and C. cliviae occurring on Camellia sinensis. In addition, our study demonstrated that the combined Webb22 okt. 2014 · START was also used to determine that the GC content in the MLST genes was comparable to that of the whole-genome GC content. To detect recombination within the Y. enterocolitica MLST data, SplitsTree 4.2 was used to compute the pairwise homoplasy index (PHI).
Webb28 sep. 2011 · Statistical significance of the proportion of variance associated with the fixation index, F ST was determined through permutation tests against a null distribution generated from the data in GenAlEx. The number of migrants (N m) between each population pair was calculated from genetic distances through the equation N m = (1 − F … WebbDistance matrices are used in phylogeny as non-parametric distance methods and were originally applied to phenetic data using a matrix of pairwise distances. These distances are then reconciled to produce a tree (a phylogram, with informative branch lengths).The distance matrix can come from a number of different sources, including measured …
Webb15 sep. 2024 · A more extreme problem of interpretation of pairwise homoplasies arises in some methods for analyzing electrophoretic data. Suppose that each of three terminal …
Webb1 jan. 2005 · Recombination tests based on the pairwise homoplasy index (PHI, Bruen, et al. 2006), Max χ 2 (Maynard Smith and Smith 1992), and … darling downs christian school feesWebb29 maj 2014 · Pairwise homoplasy index (PHI) = 3.646 −11, indicating the presence of recombination across all collections. Discussion. No apparent phylogenetic basis for observed morphological variation in F. manipularis. darling downs christian school uniformWebbThe pairwise homoplasy index (PHI) is a model test based on the fact that multiple gene phylogenies will be concordant between species and discordant due to recombination and mutations within a species. The data were analyzed by the pairwise homoplasy index (PHI) test . The test was performed in SplitsTree4 [55,56] as described by Quaedvlieg darling downs cateringWebb1 juli 2013 · The Homoplasy Test is used to examine whether there are more homoplasies on a phylogenetic tree than expected under a model of clonal inheritance, where a homoplasy is the co-occurrence of a polymorphism on separate branches of the tree ( Smith and Smith 1998 ). bismarck charityWebb17 dec. 2024 · Recombination within FOSC was tested using the pairwise homoplasy index and divergence ages were estimated by molecular dating. We called SNPs from … darling downs community careWebbPHI test and other tests of recombination The PhiPack software package implements a few tests for recombination and can produce refined incompatibility matrices as well. … darling downs christian schoolWebb2013; Chan et al. 2013). Index Fungorum (www.indexfungorum.org) has listed 126 names under this genus. In China, taxonomic research on Amauroderma began with Teng, who recorded 10 species (Teng 1936, 1939, 1963). Later Zhao et al. (1979, 1983, 1984) and Zhao & Zhang (1986, 1987a,b, 2000) reported 20 species, nine of which were new. darling downs chicken food